Running apps

Run an app on datasets stored in the cart

After browsing through the iMicrobe datasets, the data of interest can be added to your personal cart using the 'Add to cart button'.The stored datasets can be vizualized, explored and removed using the Cart icon on the top right of your screen.Using the App search interface (select 'App' from the 'Tool' dropdown menu). Open the iMicrobe app of interest.In the Imput field, select 'Cart'. This will open a discussion window. Select the files that you need to run our analysis and confirm. Fill the app parameters and run the app.

Run an app from data stored in your Cyverse Datastore

Using the App search interface (select 'App' from the 'Tool' dropdown menu). Open the iMicrobe app of interest.In the Imput field, select 'Datastore'. This will open a browser window, allowing you to explore your Cyverse datastore. Select the files that you need to run our analysis and confirm. Complete the app paramaters and run the app.

Run an app from an URL link

It is also possible to give the app an FTP URL as imput. Paste the FTP addresses, separated by semi-colons in the imput field and run the app.