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description: tutorials to run apps using the iMicrobe platform
---

# Running an app

All protocols to run app through the iMicrobe platform are freely available on protocol.io.

* [MASH ](https://www.protocols.io/view/run-mash-using-imicrobe-s9ueh6w)(de novo sample comparison)&#x20;
* [Centrifuge ](https://www.protocols.io/view/run-centrifuge-using-imicrobe-spuednw)(taxonomic classification)
* [Prodigal](https://www.protocols.io/view/run-prodigal-using-imicrobe-veje3cn) (gene functional annotation)
* [Megahit](https://www.protocols.io/view/run-megahit-using-imicrobe-uk5euy6?version_warning=no) (assembly)
* [Uproc-DNA](https://www.protocols.io/view/run-uproc-dna-using-imicrobe-u3jeykn) ( gene functional annotation)

